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The expression profiling of microRNAs reveals the differential mechanism of two contrasting soybean genotypes in response to aluminum stress

Shoucheng Huang  Guihua Lu  Chengyi Tang  Yajing Ji  Guosheng Tan  Dongqing Hu  Jing Cheng  Guhao Wang  Jinliang Qi  Yonghua Yang  
【摘要】:MicroRNA(miRNA) is one of the essential regulatory factors responsive to abiotic stresses.Soybean is an important oil-bearing crop that mainly grows in acidic soil,where Al toxicity is a major restricting factor for crop production worldwide.Molecular mechanisms of Al resistance have been extensively studied;however,miRNA-midiated differential Al tolerance in different soybean genotypes remains largely unknown.In this study,two soybean genotypes,BX10(Al-tolerant) and BD2(Al-sensitive),treated with 0 or 50 μM AlCl_3,respectively,were used to construct four miRNA libraries for deep sequencing.We detected 453 miRNAs and found that Al stress was the most important factor affecting their expression patterns.Thirty-two differentially expressed miRNAs were identified,including 19 in BX10,7 in BD2 and 6 in common.Gene Ontology analysis of their putative target genes indicated that 'stress responsive' genes and amino acid metabolism related processes preferentially occurred in BX10.Comprehensive analysis reveals that the conserved miRNAs,such as gma-miR166 k/o,gma-miR390 g and gma-miR396 c/k,mediating greater root enlongation in BX10,in comparison with gma-miR169 r mediating larger oxidative stress in BD2,could possibly be regarded as an important mechanism conferring differential Al tolerance in BX10 and BD2.This study gives new insights into the understanding of different Al response mechanisms in different soybean genotypes.

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