收藏本站
收藏 | 手机打开
二维码
手机客户端打开本文

Genetic Dissection of Eating and Cooking Qualities in Different Subpopulations of Asian Cultivated Rice(Oryza sativa L.) through Association Mapping

赵春芳  Ling Zhao  Qingyong Zhao  Tao Chen  Shu Yao  Zhen Zhu  Lihui Zhou  Altafhusian B.Nadaf  Wenhua Liang  Kai Lu  Yadong Zhang  王才林  
【摘要】:[Background] Eating and cooking qualities(ECQs) of rice(Oryza sativa L.) determine consumer acceptance and the economic value of rice varieties. Genetic factors are required for development of rice varieties with excellent ECQs and association mapping is one of the promising approaches for discovering such associated genetic factors. [Material and method] A genome-wide association mapping was performed on a set of 253 non-glutinous rice accessions consisting of 83 indica and 170 japonica Asian cultivated rice varieties through phenotyping for 11 ECQ traits in two consecutive years and genotyping with 210 polymorphic SSR and candidate-gene markers. [Results] These markers amplified 747 alleles with an average of 3.57 alleles per locus. The structure, phylogenetic relationship, and principal component analysis indicated a strong population differentiation between indica and japonica accessions and association mapping was thus undertaken within indica and japonica subpopulations. All traits showed a large phenotypic variation and highly significant phenotypic correlations were present between most of traits. A total of 33 and 30 loci were located for 11 ECQs in indica and japonica subpopulations respectively. Most of associated loci were overlapped with starch synthesis-related genes(SSRGs), and the Wx locus gathered 14 associated loci with the largest effects on amylose content, gel consistency and pasting viscosities. Eight subpopulation specific markers, RM588, Wx-(CT)n, SSI and SBE1 for indica subpopulation and RM550, Wxmp, SSIIa and SBE4 for japonica subpopulation, were identified, suggesting alleles of SSRGs showed the subspecific tendency. Nevertheless, allelic variation in SSIIa showed no tendency towards subspecies. One associated maker RM550 detected in japonica subpopulation for amylose content and pasting viscosity was verified a potential novel and stably expressed locus and also indicated selection for further fine mapping. [Conclusion] This study illustrated the potential for dissecting minor-effect genetic factors of complex traits in domesticated rice cultivars and provided highly associated markers for breeding high-quality indica or japonica rice varieties.

知网文化
【相似文献】
中国期刊全文数据库 前20条
1 Samar N.El-Beshbishi;Ayat A.ElB lihy;Raefa A.Atia;Ahmed Megahed;Fatma A.Auf;;Human leukocyte antigen class-Ⅱ DRB1 alleles and Giardia lamblia infection in children: A case-control study[J];Asian Pacific Journal of Tropical Medicine;2020年02期
2 王苗;;The characteristics of frequency distribution of KIR2DL1 alleles polymorphism and recognition HLA-C ligand in the Chinese Han population[J];China Medical Abstracts(Internal Medicine);2014年01期
3 ;Specific HLA-DQB1 alleles associated with risk for development of hepatocellular carcinoma:A meta-analysis[J];World Journal of Gastroenterology;2011年17期
4 李海峰,袁锦楣,郝洪军,阎征,王申五;HLA alleles in patients with Guillain Barre syndrome[J];Chinese Medical Journal;2000年05期
5 ;HLA-DRB1 alleles genotyping in patients with rheumatoid arthritis in Chinese.[J];China Medical Abstracts(Internal Medicine);1997年02期
6 陈保生,郭中民,何平,叶平;Structure and function of alleles in the 3' end region of human apoB gene[J];Chinese Medical Journal;1999年03期
7 Liyu Huang;Ru Zhang;Guangfu Huang;Yanxia Li;Getachew Melaku;Shilai Zhang;Haitao Chen;Yanjuan Zhao;Jing Zhang;Yesheng Zhang;Fengyi Hu;;Developing superior alleles of yield genes in rice by artificial mutagenesis using the CRISPR/Cas9 system[J];The Crop Journal;2018年05期
8 GAO Xuan;ZHU Xu-dong;FANG Na;DUAN Peng-gen;WU Ying-bao;LUO Yue-hua;LI Yun-hai;;Identification of QTLs for grain size and characterization of the beneficial alleles of grain size genes in large grain rice variety BL129[J];Journal of Integrative Agriculture;2016年01期
9 Zongqiong ZHANG;Xinghai YANG;Baoxuan NONG;Xiuzhong XIA;Yu ZENG;Kaiqiang LIU;Guofu DENG;Danting LI;;Validation of the Red Pericarp Gene from 419 Rice Landraces in Guangxi via Genome-wide Association Studies[J];Agricultural Biotechnology;2017年03期
10 Levent Doganay;Arta Fejzullahu;Seyma Katrinli;Feruze Yilmaz Enc;Oguzhan Ozturk;Yasar Colak;Celal Ulasoglu;Ilyas Tuncer;Gizem Dinler Doganay;;Association of human leukocyte antigen DQB1 and DRB1 alleles with chronic hepatitis B[J];World Journal of Gastroenterology;2014年25期
11 ;The distribution of HLA-A,-B,and-DRB1 alleles and haplotypes in inhabitants of Guizhou Province of China[J];Journal of Biomedical Research;2011年05期
12 Vildan Caner;Mustafa Yilmaz;Nadir Yonetci;Sevil Zencir;Nedim Karagenc;Ilknur Kaleli;Huseyin Bagci;;H pylori iceA alleles are disease-specific virulence factors[J];World Journal of Gastroenterology;2007年18期
13 王树玉,贾婵维,任国庆,马延敏,吕巍,丁锋,韩健;Molecular diagnosis of Down's syndrome[J];Chinese Medical Journal;2003年11期
14 王世浚,单祥年,张丽珊,高翼之,赵寿元,张志平,李方园,张芹,严明,黄鹰,茅一萍,蒋清,贺林;STUDY ON THE RFLPs AND AMPLICATION AND REARRANGEMENT OF THE TRANSFORMING GENES IN PRIMARY HEPATIC CARCINOMA, GASTRIC CARCINOMA AND BRAIN TUMOR WITH SIX HUMAN ONCOGENE PROBES[J];Chinese Journal of Cancer Research;1990年02期
15 Zaporozhan V;Zasipka L;Vorokhta Y;Babienko V;;The experience of environmental molecular epidemiological research conducted in the Southern Ukraine[J];中国现代医学杂志;2011年27期
16 ;Current status and prospects of studies on human genetic alleles associated with hepatitis B virus infection[J];World Journal of Gastroenterology;2003年04期
17 Rim Ouni;Anna Zborowska;Jasna Sehic;Sarra Choulak;J.I?aki Hormaza;Larisa Garkava-Gustavsson;Messaoud Mars;;Genetic Diversity and Structure of Tunisian Local Pear Germplasm as Revealed by SSR Markers[J];Horticultural Plant Journal;2020年02期
18 ;Analysis of HLA alleles polymorphism in Chinese patients with primary biliary cirrhosis[J];Hepatobiliary & Pancreatic Diseases International;2006年01期
19 ;Study of Swine Leukocyte Antigen Class I-3 (SLA-3) Gene for Inbreeding Wuzhishan Pig[J];Agricultural Sciences in China;2007年12期
20 ;Human leukocyte antigen class II DQB1*0301, DRB1*1101 alleles and spontaneous clearance of hepatitis C virus infection: A meta-analysis[J];World Journal of Gastroenterology;2005年46期
中国重要会议论文全文数据库 前20条
1 赵春芳;Ling Zhao;Qingyong Zhao;Tao Chen;Shu Yao;Zhen Zhu;Lihui Zhou;Altafhusian B.Nadaf;Wenhua Liang;Kai Lu;Yadong Zhang;王才林;;Genetic Dissection of Eating and Cooking Qualities in Different Subpopulations of Asian Cultivated Rice(Oryza sativa L.) through Association Mapping[A];第十九届中国作物学会学术年会论文摘要集[C];2020年
2 Xiufeng Huang;Chuan-Chao Wang;Yingxiang Li;Gang Chen;;The genetic structure of Sui people in southwest China[A];2018中国遗传学会第十次全国会员代表大会暨学术讨论会论文摘要汇编[C];2018年
3 王涛;王海涛;杨碎胜;郭红云;张斌明;苏海翔;;Association of APEX1 and OGG1 gene polymorphisms with breast cancer risk among Han women in the Gansu Province of China[A];2018年中国肿瘤标志物学术大会暨第十二届肿瘤标志物青年科学家论坛论文集[C];2018年
4 JIA Shangshuang;WANG Zhen;WEI Ling;WEN Jizhi;LUOGuoping;JI Yanli;;Identification of a novel Rhd~* 188a allele associated with a partial d phenotype[A];中国输血协会第九届输血大会论文专辑[C];2018年
5 ;Genetic Diversity Analysis of Barley Germplasm Collected from 19 Asian Countries Using Fluorescent SSR Markers[A];第十二届全国植物基因组学大会论文集[C];2011年
6 ;Subject Index 2004 (Contents in Brief)[A];广东省法医学会成立两周年暨学术交流会论文集(1)[C];2004年
7 ;Impact of CYP2D6*10 alleles on risperidone pharmacokinetics in Chinese healthy volunteers[A];第十三次全国临床药理学学术大会论文汇编[C];2012年
8 Gaoxiong Mei;Xuguo Hui;Wanghe Xin;Houyi Long;;Fingerprinting construction and genetic relationship analysis of blueberry based on EST-SSR markers[A];2016年全国植物生物学大会摘要集[C];2016年
9 Liyu Huang;Fan Zhang;Binying Fu;Zhikang Li;;Genome-wide gene expression profiling of introgressed indica rice alleles associated with seedling cold tolerance improvement in a japonica rice background[A];第十四届全国植物基因组学大会摘要[C];2013年
10 Huaiyu Wang;Zhao Cui;Jing Huang;Zhen Qu;Yimiao Zhang;Xin Wang;Fang Wang;Liqiang Meng;Xuyang Cheng;Gang Liu;Xujie Zhou;Hong Zhang;Minghui Zhao;;Associations of HLA Class Ⅱ Alleles with Clinical Phenotype and Outcome in Patients with Primary Membranous Nephropathy[A];第十三届全国免疫学学术大会分会场交流报告[C];2018年
11 Shu Zhang;Yongjie Zhang;;The intronic minisatellite OsMin1 within a serine protease gene in the Chinese caterpillar fungus Ophiocordyceps sinensis[A];中国菌物学会2016年学术年会论文摘要集[C];2016年
12 Bi Wu;Wei Hu;Mohammed Ayaad;Yongzhong Xing;;Intragenic recombination between two non-functional semi-dwarf 1 alleles produced a functional SD1 allele in a tall recombinant inbred line in rice[A];2016年全国植物生物学大会摘要集[C];2016年
13 Paul Schulze-Lefert;;Structure-function analysis of the barley MLA resistance protein[A];中国遗传学会植物遗传和基因组学专业委员会2009年学术研讨会论文摘要汇编[C];2009年
14 ;In silico map-based cloning of Pi36, a gene encodes a coiled-coil NBS-LRR protein, conferring race-specific resistance to Magnaporthe grisea[A];湖北省遗传学会、江西省遗传学会2006年学术年会暨学术讨论会论文摘要集[C];2006年
15 LI Cuijuan;HE Haohua;SHI Huan;ZHU Changlan;PENG Xiaosong;YU Qiuying;HE Xiaopeng;FU Junru;CHEN Xiaorong;HU Lifang;OUYANG Linjuan;BIAN Jianmin;;Quantitative trait loci mapping for amylose content in rice[A];2013全国植物生物学大会论文集[C];2013年
16 ;Exploitation of germplasm and elite alleles associated with salinity tolerance in Tibetan wild barley[A];2009年中国作物学会学术年会论文摘要集[C];2009年
17 Huaiyu Wang;Zhao Cui;Sufang Chen;Li Zhu;Min Chen;Minghui Zhao;;Risk HLA class Ⅱ alleles and amino acid residues in MPO-ANCA associated vasculitis[A];第十三届全国免疫学学术大会分会场交流报告[C];2018年
18 Jie Guo;Chenyang Hao;Yong Zhang;Boqiao Zhang;Xiaoming Cheng;Lin Qin;Tian Li;Weiping Shi;Xiaoping Chang;Ruilian Jing;WuyunYang;Wenjing Hu;Xueyong Zhang;Shunhe Cheng;;Association and validation of yield-favored alleles in Chinese cultivars of common wheat(Triticum aestivum L.)[A];第六届全国小麦基因组学及分子育种大会论文集[C];2015年
19 Yingxin Zhong;Zhiqiang Shi;Ye Li;Jian Cai;Xiao Wang;Qin Zhou;Zhongwei Tian;Weixing Cao;Tingbo Dai;Dong Jiang;;Starch granule morphology and processing properties variations in wheat near-isogenic lines with different null waxy alleles[A];中国作物学会——2015年学术年会论文摘要集[C];2015年
20 ;CLE signaling regulates apical meristem maintenance and vascular development rice[A];中国遗传学会植物遗传和基因组学专业委员会2009年学术研讨会论文摘要汇编[C];2009年
中国博士学位论文全文数据库 前1条
1 喻荣彬(YU Rong-Bin);HLA-DQA1、DQB1、DRB1基因多态性和慢性丙型肝炎的关系[D];南京医科大学;2006年
中国硕士学位论文全文数据库 前2条
1 CALEB MANAMIK BRERIA;[D];南京农业大学;2013年
2 WISDOM MAWULI EDZESI;[D];南京农业大学;2015年
 快捷付款方式  订购知网充值卡  订购热线  帮助中心
  • 400-819-9993
  • 010-62982499
  • 010-62783978